PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.013G129800.1
Common NamePOPTR_0013s13340g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 219aa    MW: 24556 Da    PI: 5.0269
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.013G129800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.33.2e-092272355
                        HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                        +  +++E++RR+++++ +++L +llP+ +    ++     +   +A+ +IksL+
  Potri.013G129800.1 22 TERKIIEKNRRNQMKTLYSKLNSLLPNqN---FKEPQPLPDQIDEAISHIKSLE 72
                        66789**********************66...888899999999*******996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.9631971IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-101988IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.8E-102188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-52272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.8E-42577IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0090575Cellular ComponentRNA polymerase II transcription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MVENFGGTVI MESSSNISST KTERKIIEKN RRNQMKTLYS KLNSLLPNQN FKEPQPLPDQ  60
IDEAISHIKS LEEKLKKAKE KKEGLTSSRK RSYTCTYDPM PIASPKPPQL KIQELGSALE  120
IVLTSGPDNQ FLFYEIIRIL HEEGVEVVSA NFQVLGDSIF QVLHAQMKES DNGFGAAKVT  180
ERLNMFINGS TSEIELDLEL WDFEIHPGIT GELLTGLE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006376476.11e-159hypothetical protein POPTR_0013s13340g
TrEMBLB9N5W41e-159B9N5W4_POPTR; Uncharacterized protein
STRINGPOPTR_0013s13340.11e-159(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9063498
Representative plantOGRP13451147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.17e-31bHLH family protein